Detailed information of SNP:
|
SNP ID:
sf1122412156(Gbrowse)
Chromosome: chr11 Position: 22412156 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 69.45% | 30.55% |
| All Indica | 794 | 60.45% | 39.55% |
| All Japonica | 494 | 77.33% | 22.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 36.39% | 63.61% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 332 | 68.07% | 31.93% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122412156 | G->A | LOC_Os11g38610(LOC_Os11g38610.2) | INTRON |