Detailed information of SNP:
|
SNP ID:
sf1122420589(Gbrowse)
Chromosome: chr11 Position: 22420589 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.95% | 13.05% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122420589 | A->G | INTERGENIC | None |