Detailed information of SNP:
|
SNP ID:
sf1122429510(Gbrowse)
Chromosome: chr11 Position: 22429510 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.71% | 35.29% |
| All Indica | 797 | 57.34% | 42.66% |
| All Japonica | 497 | 68.81% | 31.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122429510 | G->A | INTERGENIC | None |