Detailed information of SNP:
|
SNP ID:
sf1122434101(Gbrowse)
Chromosome: chr11 Position: 22434101 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 75.86% | 24.14% |
| All Indica | 776 | 58.38% | 41.62% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 357 | 34.17% | 65.83% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 208 | 62.50% | 37.50% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122434101 | G->A | INTERGENIC | None |