Detailed information of SNP:
|
SNP ID:
sf1122439651(Gbrowse)
Chromosome: chr11 Position: 22439651 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.09% | 34.91% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 496 | 19.56% | 80.44% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122439651 | G->T | LOC_Os11g38630(LOC_Os11g38630.1) | INTRON |