Detailed information of SNP:
|
SNP ID:
sf1122458624(Gbrowse)
Chromosome: chr11 Position: 22458624 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 86.54% | 13.46% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122458624 | A->G | INTERGENIC | None |