Detailed information of SNP:
|
SNP ID:
sf1122462189(Gbrowse)
Chromosome: chr11 Position: 22462189 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.95% | 7.05% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122462189 | C->T | INTERGENIC | None |