Detailed information of SNP:
|
SNP ID:
sf1122468999(Gbrowse)
Chromosome: chr11 Position: 22468999 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 94.27% | 5.73% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 494 | 86.64% | 13.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 334 | 90.12% | 9.88% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122468999 | G->T | INTERGENIC | None |