Detailed information of SNP:
|
SNP ID:
sf1122471150(Gbrowse)
Chromosome: chr11 Position: 22471150 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.90% | 4.10% |
| All Indica | 796 | 95.35% | 4.65% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122471150 | C->T | INTERGENIC | None |