Detailed information of SNP:
|
SNP ID:
sf1122476260(Gbrowse)
Chromosome: chr11 Position: 22476260 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 86.07% | 13.93% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 485 | 62.89% | 37.11% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 72.26% | 27.74% |
| Tropical Japonica | 91 | 49.45% | 50.55% |
| Japonica Intermediate | 66 | 34.85% | 65.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122476260 | A->G | LOC_Os11g38660(LOC_Os11g38660.1) | Non-Synonymous SNP |