Detailed information of SNP:
|
SNP ID:
sf1122476449(Gbrowse)
Chromosome: chr11 Position: 22476449 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 79.83% | 20.17% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 486 | 43.00% | 57.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 27.71% | 72.29% |
| Tropical Japonica | 87 | 80.46% | 19.54% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122476449 | T->C | LOC_Os11g38660(LOC_Os11g38660.1) | Non-Synonymous SNP |