Detailed information of SNP:
|
SNP ID:
sf1122488591(Gbrowse)
Chromosome: chr11 Position: 22488591 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 76.84% | 23.16% |
| All Indica | 798 | 71.68% | 28.32% |
| All Japonica | 492 | 84.96% | 15.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 332 | 85.24% | 14.76% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122488591 | A->T | INTERGENIC | None |