Detailed information of SNP:
|
SNP ID:
sf1122492531(Gbrowse)
Chromosome: chr11 Position: 22492531 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 69.91% | 30.09% |
| All Indica | 796 | 94.97% | 5.03% |
| All Japonica | 462 | 21.21% | 78.79% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 326 | 19.02% | 80.98% |
| Tropical Japonica | 72 | 25.00% | 75.00% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122492531 | T->C | INTERGENIC | None |