Detailed information of SNP:
|
SNP ID:
sf1122493950(Gbrowse)
Chromosome: chr11 Position: 22493950 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 77.75% | 22.25% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 496 | 51.01% | 48.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 34.43% | 65.57% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122493950 | T->C | INTERGENIC | None |