Detailed information of SNP:
|
SNP ID:
sf1122509939(Gbrowse)
Chromosome: chr11 Position: 22509939 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 81.96% | 18.04% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 50.21% | 49.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 57.70% | 42.30% |
| Tropical Japonica | 88 | 36.36% | 63.64% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122509939 | T->C | INTERGENIC | None |