Detailed information of SNP:
|
SNP ID:
sf1122521715(Gbrowse)
Chromosome: chr11 Position: 22521715 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.05% | 42.95% |
| All Indica | 798 | 42.36% | 57.64% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 212 | 4.72% | 95.28% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122521715 | A->T | INTERGENIC | None |