Detailed information of SNP:
|
SNP ID:
sf1122535129(Gbrowse)
Chromosome: chr11 Position: 22535129 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 65.13% | 34.87% |
| All Indica | 797 | 55.33% | 44.67% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 211 | 12.32% | 87.68% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122535129 | A->G | INTERGENIC | None |