Detailed information of SNP:
|
SNP ID:
sf1122575154(Gbrowse)
Chromosome: chr11 Position: 22575154 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.74% | 24.26% |
| All Indica | 798 | 61.90% | 38.10% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 63.37% | 36.63% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122575154 | C->A | INTERGENIC | None |