Detailed information of SNP:
|
SNP ID:
sf1122579458(Gbrowse)
Chromosome: chr11 Position: 22579458 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 77.49% | 22.51% |
| All Indica | 797 | 63.11% | 36.89% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122579458 | T->C | INTERGENIC | None |