Detailed information of SNP:
|
SNP ID:
sf1122585638(Gbrowse)
Chromosome: chr11 Position: 22585638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 77.98% | 22.02% |
| All Indica | 798 | 70.55% | 29.45% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122585638 | C->T | INTERGENIC | None |