Detailed information of SNP:
|
SNP ID:
sf1122597897(Gbrowse)
Chromosome: chr11 Position: 22597897 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1278 | 51.17% | 48.83% |
| All Indica | 658 | 28.42% | 71.58% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 299 | 49.50% | 50.50% |
| Indica II | 202 | 5.94% | 94.06% |
| Indica Intermediate | 157 | 17.20% | 82.80% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122597897 | G->A | LOC_Os11g38790(LOC_Os11g38790.1) | INTRON |
| sf1122597897 | G->A | LOC_Os11g38790(LOC_Os11g38790.2) | UTR_5_PRIME |