Detailed information of SNP:
|
SNP ID:
sf1122624620(Gbrowse)
Chromosome: chr11 Position: 22624620 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 51.93% | 48.07% |
| All Indica | 739 | 78.76% | 21.24% |
| All Japonica | 487 | 11.70% | 88.30% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 327 | 61.47% | 38.53% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 206 | 87.38% | 12.62% |
| Temperate Japonica | 327 | 7.65% | 92.35% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122624620 | A->C | INTERGENIC | None |