Detailed information of SNP:
|
SNP ID:
sf1122639128(Gbrowse)
Chromosome: chr11 Position: 22639128 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 81.66% | 18.34% |
| All Indica | 796 | 72.36% | 27.64% |
| All Japonica | 494 | 95.14% | 4.86% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 212 | 50.00% | 50.00% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122639128 | C->T | INTERGENIC | None |