Detailed information of SNP:
|
SNP ID:
sf1122675469(Gbrowse)
Chromosome: chr11 Position: 22675469 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.52% | 9.48% |
| All Indica | 795 | 91.57% | 8.43% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122675469 | C->T | LOC_Os11g38880(LOC_Os11g38880.1) | INTRON |