Detailed information of SNP:
|
SNP ID:
sf1122680321(Gbrowse)
Chromosome: chr11 Position: 22680321 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.37% | 6.63% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122680321 | G->A | INTERGENIC | None |