Detailed information of SNP:
|
SNP ID:
sf1122689597(Gbrowse)
Chromosome: chr11 Position: 22689597 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.06% | 20.94% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 497 | 51.71% | 48.29% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122689597 | T->G | INTERGENIC | None |