Detailed information of SNP:
|
SNP ID:
sf1122708803(Gbrowse)
Chromosome: chr11 Position: 22708803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 80.69% | 19.31% |
| All Indica | 797 | 82.69% | 17.31% |
| All Japonica | 494 | 74.29% | 25.71% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 66.76% | 33.24% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 92 | 30.43% | 69.57% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122708803 | C->T | LOC_Os11g38920(LOC_Os11g38920.2) | Synonymous |
| sf1122708803 | C->T | LOC_Os11g38920(LOC_Os11g38920.1) | Synonymous |