Detailed information of SNP:
|
SNP ID:
sf1122737498(Gbrowse)
Chromosome: chr11 Position: 22737498 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 78.71% | 21.29% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 496 | 60.89% | 39.11% |
| Aus | 64 | 17.19% | 82.81% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 44.31% | 55.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122737498 | C->A | INTERGENIC | None |