Detailed information of SNP:
|
SNP ID:
sf1122746189(Gbrowse)
Chromosome: chr11 Position: 22746189 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 80.47% | 19.53% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 487 | 46.41% | 53.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 326 | 26.38% | 73.62% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122746189 | T->C | INTERGENIC | None |