Detailed information of SNP:
|
SNP ID:
sf1122800328(Gbrowse)
Chromosome: chr11 Position: 22800328 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.34% | 38.66% |
| All Indica | 797 | 71.27% | 28.73% |
| All Japonica | 495 | 38.79% | 61.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 65.51% | 34.49% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 333 | 18.62% | 81.38% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122800328 | A->T | INTERGENIC | None |