Detailed information of SNP:
|
SNP ID:
sf1122812025(Gbrowse)
Chromosome: chr11 Position: 22812025 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 84.52% | 15.48% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 59.56% | 40.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 43.88% | 56.12% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122812025 | A->G | INTERGENIC | None |