Detailed information of SNP:
|
SNP ID:
sf1122820408(Gbrowse)
Chromosome: chr11 Position: 22820408 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 66.83% | 33.17% |
| All Indica | 787 | 53.11% | 46.89% |
| All Japonica | 489 | 84.46% | 15.54% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 368 | 72.28% | 27.72% |
| Indica II | 208 | 17.79% | 82.21% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 331 | 93.96% | 6.04% |
| Tropical Japonica | 92 | 72.83% | 27.17% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122820408 | G->A | INTERGENIC | None |