Detailed information of SNP:
|
SNP ID:
sf1122821165(Gbrowse)
Chromosome: chr11 Position: 22821165 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 78.95% | 21.05% |
| All Indica | 796 | 76.26% | 23.74% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 77.99% | 22.01% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122821165 | T->C | INTERGENIC | None |