Detailed information of SNP:
|
SNP ID:
sf1122895375(Gbrowse)
Chromosome: chr11 Position: 22895375 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.70% | 42.30% |
| All Indica | 797 | 53.58% | 46.42% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 75.13% | 24.87% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122895375 | A->T | LOC_Os11g39230(LOC_Os11g39230.1) | Non-Synonymous SNP |