Detailed information of SNP:
|
SNP ID:
sf1122923348(Gbrowse)
Chromosome: chr11 Position: 22923348 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 72.02% | 27.98% |
| All Indica | 773 | 73.22% | 26.78% |
| All Japonica | 485 | 70.93% | 29.07% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 367 | 59.13% | 40.87% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 200 | 81.00% | 19.00% |
| Temperate Japonica | 331 | 80.66% | 19.34% |
| Tropical Japonica | 90 | 30.00% | 70.00% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122923348 | G->C | INTERGENIC | None |