Detailed information of SNP:
|
SNP ID:
sf1122928369(Gbrowse)
Chromosome: chr11 Position: 22928369 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 96.18% | 3.82% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 495 | 91.72% | 8.28% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 90.42% | 9.58% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122928369 | G->A | LOC_Os11g39290(LOC_Os11g39290.1) | Non-Synonymous SNP |