Detailed information of SNP:
|
SNP ID:
sf1122938164(Gbrowse)
Chromosome: chr11 Position: 22938164 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.90% | 24.10% |
| All Indica | 795 | 86.54% | 13.46% |
| All Japonica | 497 | 55.33% | 44.67% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122938164 | A->G | LOC_Os11g39310(LOC_Os11g39310.1) | Synonymous |