Detailed information of SNP:
|
SNP ID:
sf1122938252(Gbrowse)
Chromosome: chr11 Position: 22938252 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.94% | 45.06% |
| All Indica | 797 | 49.31% | 50.69% |
| All Japonica | 496 | 69.96% | 30.04% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 30.56% | 69.44% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122938252 | C->T | LOC_Os11g39310(LOC_Os11g39310.1) | Non-Synonymous SNP |