Detailed information of SNP:
|
SNP ID:
sf1122940671(Gbrowse)
Chromosome: chr11 Position: 22940671 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 86.07% | 13.93% |
| All Indica | 788 | 82.87% | 17.13% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 80.00% | 20.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122940671 | A->C | LOC_Os11g39310(LOC_Os11g39310.1) | Non-Synonymous SNP |