Detailed information of SNP:
|
SNP ID:
sf1122965818(Gbrowse)
Chromosome: chr11 Position: 22965818 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 85.07% | 14.93% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 492 | 71.75% | 28.25% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 66.47% | 33.53% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122965818 | C->A | LOC_Os11g39370(LOC_Os11g39370.1) | Non-Synonymous SNP |