Detailed information of SNP:
|
SNP ID:
sf1122967550(Gbrowse)
Chromosome: chr11 Position: 22967550 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.50% | 15.50% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 70.82% | 29.18% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122967550 | C->A | LOC_Os11g39370(LOC_Os11g39370.1) | INTRON |
| sf1122967550 | C->A | LOC_Os11g39370(LOC_Os11g39370.2) | INTRON |