Detailed information of SNP:
|
SNP ID:
sf1122972554(Gbrowse)
Chromosome: chr11 Position: 22972554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 85.16% | 14.84% |
| All Indica | 775 | 78.71% | 21.29% |
| All Japonica | 479 | 92.90% | 7.10% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 69.57% | 30.43% |
| Indica II | 201 | 94.03% | 5.97% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 321 | 89.41% | 10.59% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122972554 | G->A | INTERGENIC | None |