Detailed information of SNP:
|
SNP ID:
sf1122984855(Gbrowse)
Chromosome: chr11 Position: 22984855 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 88.07% | 11.93% |
| All Indica | 744 | 82.53% | 17.47% |
| All Japonica | 480 | 96.46% | 3.54% |
| Aus | 59 | 86.44% | 13.56% |
| Indica I | 345 | 87.25% | 12.75% |
| Indica II | 198 | 74.24% | 25.76% |
| Indica Intermediate | 201 | 82.59% | 17.41% |
| Temperate Japonica | 328 | 97.56% | 2.44% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122984855 | A->T | INTERGENIC | None |