Detailed information of SNP:
|
SNP ID:
sf1122986401(Gbrowse)
Chromosome: chr11 Position: 22986401 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 71.57% | 28.43% |
| All Indica | 742 | 60.65% | 39.35% |
| All Japonica | 480 | 92.71% | 7.29% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 344 | 64.83% | 35.17% |
| Indica II | 201 | 50.25% | 49.75% |
| Indica Intermediate | 197 | 63.96% | 36.04% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 90 | 75.56% | 24.44% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122986401 | A->C | INTERGENIC | None |