Detailed information of SNP:
|
SNP ID:
sf1122986516(Gbrowse)
Chromosome: chr11 Position: 22986516 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 75.50% | 24.50% |
| All Indica | 742 | 66.31% | 33.69% |
| All Japonica | 479 | 94.15% | 5.85% |
| Aus | 62 | 43.55% | 56.45% |
| Indica I | 350 | 69.43% | 30.57% |
| Indica II | 198 | 55.05% | 44.95% |
| Indica Intermediate | 194 | 72.16% | 27.84% |
| Temperate Japonica | 330 | 97.88% | 2.12% |
| Tropical Japonica | 88 | 78.41% | 21.59% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122986516 | A->G | INTERGENIC | None |