Detailed information of SNP:
|
SNP ID:
sf1122989541(Gbrowse)
Chromosome: chr11 Position: 22989541 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 80.11% | 19.89% |
| All Indica | 793 | 98.11% | 1.89% |
| All Japonica | 492 | 50.81% | 49.19% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 332 | 30.42% | 69.58% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1122989541 | T->C | INTERGENIC | None |