Detailed information of SNP:



SNP ID: sf1122989541(Gbrowse)

Chromosome: chr11

Position: 22989541
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 80.11% 19.89%
All Indica793 98.11% 1.89%
All Japonica492 50.81% 49.19%
Aus67 76.12% 23.88%
Indica I372 98.39% 1.61%
Indica II210 98.57% 1.43%
Indica Intermediate211 97.16% 2.84%
Temperate Japonica332 30.42% 69.58%
Tropical Japonica93 97.85% 2.15%
Japonica Intermediate67 86.57% 13.43%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1122989541 T->C INTERGENIC None