Detailed information of SNP:
|
SNP ID:
sf1123028365(Gbrowse)
Chromosome: chr11 Position: 23028365 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 68.73% | 31.27% |
| All Indica | 775 | 59.10% | 40.90% |
| All Japonica | 492 | 85.98% | 14.02% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 364 | 49.18% | 50.82% |
| Indica II | 207 | 75.36% | 24.64% |
| Indica Intermediate | 204 | 60.29% | 39.71% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 91 | 65.93% | 34.07% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123028365 | T->C | LOC_Os11g39450(LOC_Os11g39450.1) | Synonymous |