Detailed information of SNP:
|
SNP ID:
sf1123087270(Gbrowse)
Chromosome: chr11 Position: 23087270 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 55.27% | 44.73% |
| All Indica | 774 | 58.66% | 41.34% |
| All Japonica | 488 | 46.31% | 53.69% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 369 | 41.19% | 58.81% |
| Indica II | 197 | 87.31% | 12.69% |
| Indica Intermediate | 208 | 62.50% | 37.50% |
| Temperate Japonica | 330 | 28.18% | 71.82% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123087270 | C->T | INTERGENIC | None |