Detailed information of SNP:
|
SNP ID:
sf1123091075(Gbrowse)
Chromosome: chr11 Position: 23091075 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.94% | 43.06% |
| All Indica | 799 | 60.20% | 39.80% |
| All Japonica | 497 | 47.89% | 52.11% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 42.40% | 57.60% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 28.96% | 71.04% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123091075 | G->A | LOC_Os11g39540(LOC_Os11g39540.1) | INTRON |