Detailed information of SNP:
|
SNP ID:
sf1123098094(Gbrowse)
Chromosome: chr11 Position: 23098094 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 89.54% | 10.46% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 467 | 70.88% | 29.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 322 | 73.60% | 26.40% |
| Tropical Japonica | 84 | 65.48% | 34.52% |
| Japonica Intermediate | 61 | 63.93% | 36.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123098094 | A->T | INTERGENIC | None |